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    si:dkey-183p4.10 si:dkey-183p4.10 [ Danio rerio (zebrafish) ]

    Gene ID: 100005882, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:dkey-183p4.10provided by ZNC
    Official Full Name
    si:dkey-183p4.10provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081104-337
    See related
    Ensembl:ENSDARG00000077907 AllianceGenome:ZFIN:ZDB-GENE-081104-337
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (25358868..25367174)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (25340401..25348035)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene TRAF3 interacting protein 3 Neighboring gene deoxyribonuclease I-like 1-like Neighboring gene uncharacterized LOC101885388 Neighboring gene potassium voltage-gated channel, KQT-like subfamily, member 2a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    dentin sialophosphoprotein; tanabin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      25358868..25367174
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005167117.4 → XP_005167174.1  dentin sialophosphoprotein isoform X2

      UniProtKB/TrEMBL
      A0A8M2BEK3
      Conserved Domains (1) summary
      COG5271
      Location:36 → 279
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

    2. XM_001344771.5 → XP_001344807.2  tanabin isoform X1

      UniProtKB/TrEMBL
      A0A8M1PSX2, F1Q6B0
      Related
      ENSDARP00000103899.2, ENSDART00000111248.4
      Conserved Domains (1) summary
      COG5271
      Location:36 → 279
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases